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TEAM LADE

Matteo Biagetti

Researcher at Laboratory of Data Engineering

After working for several years in theoretical physics, I’ve recently moved towards data-oriented research. I’m using Topological Data Analysis techniques to study the geometry of representations of convolutional neural networks and large transformer models applied to a diverse range of datasets, including protein sequences, images, and text. I am also working to develop FAIR workflows of data and metadata for laboratories of material and life sciences.

Research Interests 
  • Topological Data Analysis
  • Machine Learning
  • FAIR-by-design
  • Theoretical Physics
Experience & Education
  • Postdoc at SISSA, 2023
  • Postdoc at University of Amsterdam, 2020
  • PhD in Theoretical Physics at University of Geneva, 2016
  • MSc in Theoretical Physics at University of Padova, 2011
Latest publications
03/06/2024
Age-dependent regulation of ELP1 exon 20 splicing in Familial Dysautonomia by RNA Polymerase II kinetics and chromatin structure
Abstract Familial Dysautonomia (FD) is a rare disease caused by ELP1 exon 20 skipping. Here…
Go to the news Age-dependent regulation of ELP1 exon 20 splicing in Familial Dysautonomia by RNA Polymerase II kinetics and chromatin structure
01/06/2024
Protein family annotation for the Unified Human Gastrointestinal Proteome by DPCfam clustering
Abstract Technological advances in massively parallel sequencing have led to an exponential growth in the…
Go to the news Protein family annotation for the Unified Human Gastrointestinal Proteome by DPCfam clustering
09/03/2024
Adipose-derived stem cell exosomes act as delivery vehicles of microRNAs in a dog model of chronic hepatitis
Abstract Exosomes are nanosized extracellular vesicles secreted by all cell types, including canine adipose-derived stem…
Go to the news Adipose-derived stem cell exosomes act as delivery vehicles of microRNAs in a dog model of chronic hepatitis
Projects
04/11/2019
BIO Open Lab
BIO Open Lab strengthens the distributed research infrastructure CERIC – Central European Research Infrastructure Consortium, established in the…
Go to the news BIO Open Lab
31/01/2022
A-RING Alpine Research and Innovation Capacity Governance
The main objective of the A-RING project is to establish the foundations for effective and…
Go to the news A-RING Alpine Research and Innovation Capacity Governance
19/09/2024
AI-GRAPE
The AI-GRAPE project aims to support the digitalization of the wine-growing sector in the Italy-Slovenia…
Go to the news AI-GRAPE